diff --git a/CapabilityStatement/CapabilityStatement-genomics-requirements.json b/CapabilityStatement/CapabilityStatement-genomics-requirements.json index 718e6ed..5e0ed35 100644 --- a/CapabilityStatement/CapabilityStatement-genomics-requirements.json +++ b/CapabilityStatement/CapabilityStatement-genomics-requirements.json @@ -2,10 +2,10 @@ "resourceType": "CapabilityStatement", "id": "CapabilityStatement-Genomics-requirements", "url": "https://fhir.nhs.uk/CapabilityStatement/genomics-requirements", - "version": "0.3.0", + "version": "0.3.1", "name": "GenomicsRequirements", "status": "draft", - "date": "2026-01-14T00:00:00+00:00", + "date": "2026-06-11T00:00:00+00:00", "publisher": "digital.nhs.uk", "description": "Conformance requirements for NHS Digital Genomics Implementation Guide", "kind": "requirements", @@ -45,7 +45,7 @@ }, { "type": "DocumentReference", - "profile": "https://fhir.nhs.uk/StructureDefinition/NHSEngland-DocumentReference-GenomicDataFile + "profile": "https://fhir.nhs.uk/StructureDefinition/NHSEngland-DocumentReference-GenomicDataFile" }, { "type": "CodeSystem", diff --git a/Composition/Composition-EULabGenomicReport-Example.json b/Composition/Composition-EULabGenomicReport-Example.json index 4455a29..92b1687 100644 --- a/Composition/Composition-EULabGenomicReport-Example.json +++ b/Composition/Composition-EULabGenomicReport-Example.json @@ -26,6 +26,10 @@ } } ], + "identifier": { + "system": "https://fhir.nhs.uk/Id/genomic-report", + "value": "GR-12345" + }, "status": "final", "type": { "coding": [ @@ -76,6 +80,10 @@ "section": [ { "title": "Results", + "text": { + "status": "generated", + "div": "
Genomic findings.
" + }, "code": { "coding": [ { diff --git a/ConceptMap/ConceptMap-Genomics-chromosomal-sex.json b/ConceptMap/ConceptMap-Genomics-chromosomal-sex.json index b69bc8a..f543155 100644 --- a/ConceptMap/ConceptMap-Genomics-chromosomal-sex.json +++ b/ConceptMap/ConceptMap-Genomics-chromosomal-sex.json @@ -2,11 +2,11 @@ "resourceType": "ConceptMap", "id": "genomics-chromosomal-sex", "url": "https://fhir.nhs.uk/ConceptMap/genomics-chromosomal-sex", - "version": "0.1.0", + "version": "0.2.0", "name": "GenomicsChromosomalSex", "title": "Genomics Chromosomal Sex", "status": "draft", - "date": "2025-09-05T10:33:00.000Z", + "date": "2026-06-11T10:33:00.000Z", "publisher": "NHS England", "contact": [ { @@ -22,7 +22,7 @@ "description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.", "purpose": "ConceptMap used for the translation and recording of chromosomal sex. This is intended for the element Observation.code. An appropriate SNOMED CT code or free text should be used to record the sex of other is selected.", "copyright": "Copyright © 2025+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.", - "targetUri": "http://snomed.info/sct", + "targetUri": "http://snomed.info/sct?fhir_vs", "group": [ { "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117", diff --git a/ConceptMap/ConceptMap-Genomics-fetal-maternal-screening-genotype.json b/ConceptMap/ConceptMap-Genomics-fetal-maternal-screening-genotype.json index 80049a7..c65fe3f 100644 --- a/ConceptMap/ConceptMap-Genomics-fetal-maternal-screening-genotype.json +++ b/ConceptMap/ConceptMap-Genomics-fetal-maternal-screening-genotype.json @@ -2,11 +2,11 @@ "resourceType": "ConceptMap", "id": "genomics-fetal-maternal-screening-genotype", "url": "https://fhir.nhs.uk/ConceptMap/genomics-fetal-maternal-screening-genotype", - "version": "0.3.0", + "version": "0.4.0", "name": "GenomicsFetalMaternalScreeningGenotype", "title": "Genomics Fetal Maternal Screening Genotype", "status": "draft", - "date": "2025-10-05T21:00:00.000Z", + "date": "2026-06-11T21:00:00.000Z", "publisher": "NHS England", "contact": [ { @@ -22,7 +22,7 @@ "description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.", "purpose": "ConceptMap used for the translation and recording of concepts for fetal maternal screening genotype. This is intended for the element Condition.code. An appropriate SNOMED CT code or free text should be used to record the Genotype.", "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.", - "targetUri": "http://snomed.info/sct", + "targetUri": "http://snomed.info/sct?fhir_vs", "group": [ { "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117", diff --git a/ConceptMap/ConceptMap-Genomics-risk-reason-for-specimen-specialhandling.json b/ConceptMap/ConceptMap-Genomics-risk-reason-for-specimen-specialhandling.json index e9825b3..e55d1ee 100644 --- a/ConceptMap/ConceptMap-Genomics-risk-reason-for-specimen-specialhandling.json +++ b/ConceptMap/ConceptMap-Genomics-risk-reason-for-specimen-specialhandling.json @@ -2,11 +2,11 @@ "resourceType": "ConceptMap", "id": "genomics-risk-reason-for-specimen-specialhandling", "url": "https://fhir.nhs.uk/ConceptMap/genomics-risk-reason-for-specimen-specialhandling", - "version": "0.3.0", + "version": "0.4.0", "name": "GenomicsRiskReasonForSpecimenSpecialHandling", "title": "Genomics Risk Reason for Specimen Special Handling", "status": "draft", - "date": "2025-09-05T11:00:00.000Z", + "date": "2026-06-11T11:00:00.000Z", "publisher": "NHS England", "contact": [ { @@ -22,7 +22,7 @@ "description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.", "purpose": "ConceptMap used for the translation and recording of the risk reason for specimen special handling . This is intended for the element Specimen.collection.extension:specimen-specialHandling.valueCoding.code", "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.", - "targetUri": "http://snomed.info/sct", + "targetUri": "http://snomed.info/sct?fhir_vs", "group": [ { "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117", diff --git a/Patient/Patient-PheobeSmitham-Example.json b/Patient/Patient-PheobeSmitham-Example.json index 181eb7c..1027146 100644 --- a/Patient/Patient-PheobeSmitham-Example.json +++ b/Patient/Patient-PheobeSmitham-Example.json @@ -4,7 +4,7 @@ "meta": { "profile": [ "https://fhir.hl7.org.uk/StructureDefinition/UKCore-Patient", - "http://hl7.eu/fhir/laboratory/StructureDefinition/Patient-eu-lab" + "http://hl7.eu/fhir/base/StructureDefinition/patient-eu-core" ] }, "extension": [ diff --git a/fhirpkg.lock.json b/fhirpkg.lock.json index df3c15f..e04a9c6 100644 --- a/fhirpkg.lock.json +++ b/fhirpkg.lock.json @@ -1,12 +1,12 @@ { "updated": "2026-05-06T10:21:55.9845039+01:00", "dependencies": { - "hl7.fhir.r4.core": "4.0.1", + "hl7.fhir.r4.core": "4.0.1", "hl7.fhir.uv.extensions.r4": "5.3.0-ballot-tc1", "hl7.fhir.uv.xver-r5.r4": "0.1.0", "hl7.fhir.uv.genomics-reporting": "3.0.0", "hl7.fhir.uv.ips": "2.0.0", - "hl7.fhir.eu.laboratory": "0.1.1", + "hl7.fhir.eu.laboratory": "2.0.0", "ihe.iti.pcf": "1.1.0", "hl7.fhir.us.mcode": "4.0.0", "fhir.r4.nhsengland.pathology": "0.1.4-alpha", diff --git a/package.json b/package.json index b104930..44d68f3 100644 --- a/package.json +++ b/package.json @@ -8,7 +8,7 @@ "hl7.fhir.uv.xver-r5.r4": "0.1.0", "hl7.fhir.uv.genomics-reporting": "3.0.0", "hl7.fhir.uv.ips": "2.0.0", - "hl7.fhir.eu.laboratory": "0.1.1", + "hl7.fhir.eu.laboratory": "2.0.0", "ihe.iti.pcf": "1.1.0", "hl7.fhir.us.mcode": "4.0.0", "fhir.r4.nhsengland.pathology": "0.1.4-alpha",