diff --git a/src/diffusers/pipelines/flux/pipeline_flux.py b/src/diffusers/pipelines/flux/pipeline_flux.py
index e125924adf7f..34cbf0faa667 100644
--- a/src/diffusers/pipelines/flux/pipeline_flux.py
+++ b/src/diffusers/pipelines/flux/pipeline_flux.py
@@ -821,6 +821,13 @@ def __call__(
             negative_prompt_embeds is not None and negative_pooled_prompt_embeds is not None
         )
         do_true_cfg = true_cfg_scale > 1 and has_neg_prompt
+        if do_true_cfg and prompt_embeds is not None and negative_prompt_embeds is not None:
+            if prompt_embeds.shape != negative_prompt_embeds.shape:
+                raise ValueError(
+                    "`prompt_embeds` and `negative_prompt_embeds` must have the same shape when passed directly, but"
+                    f" got: `prompt_embeds` {prompt_embeds.shape} != `negative_prompt_embeds`"
+                    f" {negative_prompt_embeds.shape}."
+                )
         (
             prompt_embeds,
             pooled_prompt_embeds,
diff --git a/src/diffusers/pipelines/flux/pipeline_flux_controlnet_image_to_image.py b/src/diffusers/pipelines/flux/pipeline_flux_controlnet_image_to_image.py
index 65b2072a7746..61c9da0c9496 100644
--- a/src/diffusers/pipelines/flux/pipeline_flux_controlnet_image_to_image.py
+++ b/src/diffusers/pipelines/flux/pipeline_flux_controlnet_image_to_image.py
@@ -454,7 +454,7 @@ def check_inputs(
         if strength < 0 or strength > 1:
             raise ValueError(f"The value of strength should in [0.0, 1.0] but is {strength}")
 
-        if height % self.vae_scale_factor * 2 != 0 or width % self.vae_scale_factor * 2 != 0:
+        if height % (self.vae_scale_factor * 2) != 0 or width % (self.vae_scale_factor * 2) != 0:
             logger.warning(
                 f"`height` and `width` have to be divisible by {self.vae_scale_factor * 2} but are {height} and {width}. Dimensions will be resized accordingly"
             )
diff --git a/src/diffusers/pipelines/flux/pipeline_flux_kontext.py b/src/diffusers/pipelines/flux/pipeline_flux_kontext.py
index efddc6cea139..e32bfecfcdad 100644
--- a/src/diffusers/pipelines/flux/pipeline_flux_kontext.py
+++ b/src/diffusers/pipelines/flux/pipeline_flux_kontext.py
@@ -949,6 +949,13 @@ def __call__(
             negative_prompt_embeds is not None and negative_pooled_prompt_embeds is not None
         )
         do_true_cfg = true_cfg_scale > 1 and has_neg_prompt
+        if do_true_cfg and prompt_embeds is not None and negative_prompt_embeds is not None:
+            if prompt_embeds.shape != negative_prompt_embeds.shape:
+                raise ValueError(
+                    "`prompt_embeds` and `negative_prompt_embeds` must have the same shape when passed directly, but"
+                    f" got: `prompt_embeds` {prompt_embeds.shape} != `negative_prompt_embeds`"
+                    f" {negative_prompt_embeds.shape}."
+                )
         (
             prompt_embeds,
             pooled_prompt_embeds,
diff --git a/src/diffusers/pipelines/flux/pipeline_flux_prior_redux.py b/src/diffusers/pipelines/flux/pipeline_flux_prior_redux.py
index 94c7bcc80782..f173fdef88c6 100644
--- a/src/diffusers/pipelines/flux/pipeline_flux_prior_redux.py
+++ b/src/diffusers/pipelines/flux/pipeline_flux_prior_redux.py
@@ -172,12 +172,18 @@ def check_inputs(
             raise ValueError(
                 "If `prompt_embeds` are provided, `pooled_prompt_embeds` also have to be passed. Make sure to generate `pooled_prompt_embeds` from the same text encoder that was used to generate `prompt_embeds`."
             )
-        if isinstance(prompt_embeds_scale, list) and (
-            isinstance(image, list) and len(prompt_embeds_scale) != len(image)
+        image_batch_size = (
+            image.shape[0] if isinstance(image, torch.Tensor) else len(image) if isinstance(image, list) else 1
+        )
+        for scale_name, scale in (
+            ("prompt_embeds_scale", prompt_embeds_scale),
+            ("pooled_prompt_embeds_scale", pooled_prompt_embeds_scale),
         ):
-            raise ValueError(
-                f"number of weights must be equal to number of images, but {len(prompt_embeds_scale)} weights were provided and {len(image)} images"
-            )
+            if isinstance(scale, list) and len(scale) != image_batch_size:
+                raise ValueError(
+                    f"number of weights in `{scale_name}` must be equal to number of images, but "
+                    f"{len(scale)} weights were provided and {image_batch_size} images"
+                )
 
     def encode_image(self, image, device, num_images_per_prompt):
         dtype = next(self.image_encoder.parameters()).dtype
diff --git a/tests/pipelines/flux/test_pipeline_flux.py b/tests/pipelines/flux/test_pipeline_flux.py
index 13336f0cde9b..cdc2974b2b54 100644
--- a/tests/pipelines/flux/test_pipeline_flux.py
+++ b/tests/pipelines/flux/test_pipeline_flux.py
@@ -234,6 +234,25 @@ def test_flux_true_cfg(self):
             np.allclose(no_true_cfg_out, true_cfg_out), "Outputs should be different when true_cfg_scale is set."
         )
 
+    def test_flux_negative_embeds_shape_check(self):
+        pipe = self.pipeline_class(**self.get_dummy_components()).to(torch_device)
+
+        base_inputs = {
+            "prompt_embeds": torch.randn(1, 4, 32, device=torch_device),
+            "pooled_prompt_embeds": torch.randn(1, 32, device=torch_device),
+            "negative_prompt_embeds": torch.randn(1, 5, 32, device=torch_device),
+            "negative_pooled_prompt_embeds": torch.randn(1, 32, device=torch_device),
+            "height": 16,
+            "width": 16,
+            "num_inference_steps": 1,
+            "output_type": "latent",
+        }
+
+        with self.assertRaisesRegex(ValueError, "must have the same shape when passed directly"):
+            pipe(**base_inputs, true_cfg_scale=2.0, generator=torch.manual_seed(0))
+
+        pipe(**base_inputs, true_cfg_scale=1.0, generator=torch.manual_seed(0))
+
 
 @nightly
 @require_big_accelerator