Version
1.1.1rc1 and likely all precedent ones.
Description
The identifiers from README previously worked correctly in 1.1.1rc:
A0A060X1A3
A0A087X979
A0A091CQV1
A0A091F6W6
producing a tree. Now (as of 30/07/26),
foldtree --folder myfam -p -c 4 --no-filter
for these 4 IDs makes a tree with 3 leafs:
> cat myfam/foldtree_struct_tree.PP.nwk.rooted.final
(A0A091F6W6:0.05565,A0A091CQV1:0.03905,A0A087X979:0.33205);
The pipeline runs successfully with no error. ID A0A060X1A3 is missing from the result.
The structure in AlphaFold is available, but it seems that it's UniProt page was archived: https://www.uniprot.org/uniprot/A0A060X1A3.
I assume we should not silently ignore these instances and give a warning at least, or use the structure anyway if it's available in AFDB.
Version
1.1.1rc1and likely all precedent ones.Description
The identifiers from README previously worked correctly in
1.1.1rc:producing a tree. Now (as of 30/07/26),
for these 4 IDs makes a tree with 3 leafs:
The pipeline runs successfully with no error. ID
A0A060X1A3is missing from the result.The structure in AlphaFold is available, but it seems that it's UniProt page was archived: https://www.uniprot.org/uniprot/A0A060X1A3.
I assume we should not silently ignore these instances and give a warning at least, or use the structure anyway if it's available in AFDB.