Skip to content

updating ePSIC mib convert workflows #352

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
fallars merged 1 commit into from
Sep 16, 2026
Merged

updating ePSIC mib convert workflows #352

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion e02/schema/mib2x_auto_Schema.json
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -69,7 +69,7 @@
"DEBUG":
{
"type": "integer",
"default": 1
"default": 0
}
}
}
Expand Down
6 changes: 3 additions & 3 deletions e02/templates/mib2x-auto.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@ metadata:
labels:
workflows.diamond.ac.uk/science-group-imaging: "true"
annotations:
workflows.argoproj.io/title: ePSIC mib automatic conversion
workflows.argoproj.io/title: ePSIC mib Batch conversion
workflows.argoproj.io/description: |
Convert MIB file to hdf5/hspy files
workflows.diamond.ac.uk/repository: "https://github.com/DiamondLightSource/imaging-workflows"
Expand Down Expand Up @@ -126,14 +126,14 @@ spec:
logging.append('\nThe following path exists: %s\nskipping creation of folder\n' %dest_path)
else:
logging.append('\nThe following path does not exists: %s\nTherefore creating this folder now...\n' %dest_path)
os.mkdir(dest_path)
os.makedirs(dest_path)

os.chdir(dest_path)
logging.append('***\nsearching destination path for already converted files: %s\n***' % dest_path)

#ToDO wrap the rest of the function within this as means no other files have been created
if not os.path.exists(dest_path):
os.mkdir(dest_path)
os.makdirs(dest_path)
logging.append('the following folder has been created: %s' % dest_path)

for num, file in enumerate(sorted(list(glob.glob('*/**data.hdf5*')))):
Expand Down
2 changes: 1 addition & 1 deletion e02/templates/mib2x.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@ metadata:
labels:
workflows.diamond.ac.uk/science-group-imaging: "true"
annotations:
workflows.argoproj.io/title: ePSIC mib conversion
workflows.argoproj.io/title: ePSIC single mib conversion
workflows.argoproj.io/description: |
Convert MIB file to hdf5/hspy files
workflows.diamond.ac.uk/repository: "https://github.com/DiamondLightSource/imaging-workflows"
Expand Down