All pull requests

Pull requests

• Fix gui.py startup on PyQt5 and Python 3.9 (replaces #1477, #1478, #1479)

  #1494·wong-ziyi opened Sep 14, 2026·

  ·

• Fix neighbouring cell gradient contamination in _extend_centers_gpu

  #1487·remi-pigache opened Aug 4, 2026·

  ·
  1

• ...

  #1481·sbamopoulos opened Jun 27, 2026·

  ·

• Fix shrink_labels for 1D face strips in 2D distributed segmentation

  #1480·sbamopoulos opened Jun 27, 2026·

  ·

• Feature: Add large slider popup

  #1457·mrariden opened May 21, 2026Collaborator·

  ·
  1

• Add SLURM cluster support (cellpose 3.x backport)

  #1444·karimi-ali opened May 5, 2026·

  ·

• Add SLURM cluster support to distributed_segmentation

  #1443·karimi-ali opened May 5, 2026·

  ·
  2

• Views box color choose

  #1439·mrariden opened Apr 28, 2026Collaborator·

  ·

• make merging cells faster

  #1433·Turu-Tamas opened Apr 12, 2026·

  ·

• feat: Add Flash-Attention Support

  #1429·bobqianic opened Apr 6, 2026·

  ·

• Add MLX backend support and optimize inference for Apple Silicon

  #1426·hkmoon opened Apr 1, 2026·

  ·
  7

• fix: autoload _cp_masks and escape glob metacharacters in paths

  #1421·skpalan opened Mar 29, 2026·

  ·

• Speed up multi-ROI deletion in the GUI

  #1420·chenyenchung opened Mar 24, 2026·

  ·
  3

• optimise dev env: use pre-built binaries and align with setup.py

  #1410·qin-yu opened Feb 24, 2026Contributor·

  ·
  2

• feat(plot): add share_axes to show_segmentation for synced viewing

  #1405·shcrela opened Feb 11, 2026·

  ·
  2

• support channel_axis in _get_batch

  #1399·piever opened Jan 26, 2026·

  ·

• Refactored the distributed_eval from the contrib package

  #1382·cgoina opened Dec 13, 2025·

  ·
  1

• feat: fix training when load_files=False

  #1381·spkgyk opened Dec 11, 2025·

  ·

• feat: Enable custom loss callbacks for integration with wandb/mlflow/tensorboard with early stopping

  #1380·yuguerten opened Dec 10, 2025·

  ·

• Fix to issue #1375 to make it also zarr v3 compatible

  #1379·felixS27 opened Dec 9, 2025·

  ·
  2

• Faster TensorRT Runtime for CellposeSAM

  #1356·chaichontat opened Oct 24, 2025Contributor·

  ·
  1

• Fix: io.omread_3D used when channel_axis > 0

  #1344·dimitri-fabreges opened Oct 9, 2025·

  ·

• Proof-of-concept: Cellpose distributed on Slurm cluster with AMD GPUs

  #1334·erjel opened Sep 29, 2025Contributor·

  ·
  1

  2

• Update gui.py for

  #1295·derekthirstrup opened Aug 5, 2025·

  ·
  2

• fix: handle 403 Forbidden in download_url_to_file

  #1283·GoldenSection0618 opened Jul 25, 2025·

  ·
  1