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2456c66
CDM v5.3 to v5.4 conversion scripts, initial commit
AnthonyMolinaro Jan 6, 2022
64a8fd6
Script to assist in migration from 6.0 to 5.4
AnthonyMolinaro Jan 27, 2022
2c61a52
Update redshift_migration.sql
AnthonyMolinaro Mar 4, 2022
bdb5789
Update sqlserver_migration.sql
AnthonyMolinaro Mar 4, 2022
e10628d
Update postgresql_migration.sql
AnthonyMolinaro Mar 4, 2022
65166e4
Update oracle_migration.sql
AnthonyMolinaro Mar 4, 2022
074bd28
Update netezza_migration.sql
AnthonyMolinaro Mar 4, 2022
4ac3d61
Update impala_migration.sql
AnthonyMolinaro Mar 4, 2022
c4ab611
Update bigquery_migration.sql
AnthonyMolinaro Mar 4, 2022
759270d
create ER diagram from OMOP CDM specification
MaximMoinat Nov 30, 2022
0c07bfe
add option to only include subset of tables
MaximMoinat Dec 1, 2022
ad666fd
remove drug end date convention
MaximMoinat Jun 6, 2024
af17663
Standardise case of integer datatype
wardle Jun 9, 2024
abe7587
render cdm specs
MaximMoinat Jun 14, 2024
feb0b79
Fix typos cdm54.html
eroell Jul 22, 2024
990531b
Fix typo in cdm53.html
eroell Jul 22, 2024
ce456b4
Fix typo in cdm60.html
eroell Jul 22, 2024
1de5a4b
fix typos in .csv s
eroell Jul 22, 2024
bf335b8
Merge branch 'patch-1' of github.com:eroell/CommonDataModel into patch-1
eroell Jul 22, 2024
b437f60
undo changes to htmls
eroell Jul 22, 2024
032e842
Adding creative commons license
clairblacketer Jul 23, 2024
5fa4ad3
Removing test that caused issues with downstream packages
clairblacketer Sep 30, 2024
aa047a3
Removing codespell and older ddl folder for CRAN submission
clairblacketer Sep 30, 2024
b53e7da
Editing description for newest release of package
clairblacketer Sep 30, 2024
4125328
Adding CRAN comments for submission
clairblacketer Sep 30, 2024
17b2d13
Cran submission Oct 2024
clairblacketer Oct 1, 2024
c840423
fix: dead links for 5.4 docs source csvs
lawrenceadams Oct 2, 2024
080816f
fix: deadlinks in 5.4 rendered docs
lawrenceadams Oct 2, 2024
720b548
fix: data model conventions dead links
lawrenceadams Oct 2, 2024
c914c1a
Update CRAN-SUBMISSION
clairblacketer Oct 15, 2024
330c087
docs update
clairblacketer Dec 16, 2024
561c93d
Revert "docs update"
clairblacketer Jan 7, 2025
9b5f756
Merge pull request #694 from OHDSI/MaximMoinat-patch-2
MaximMoinat Feb 20, 2025
696cf58
fix typo
MaximMoinat Feb 20, 2025
bbc3fb9
remove reference to value_as_datetime
MaximMoinat Feb 21, 2025
033253f
Merge pull request #718 from lawrenceadams/lawrenceadams-fix-54-docs-…
clairblacketer Mar 6, 2025
76d3701
Merge branch 'main' into fix-729
clairblacketer Mar 6, 2025
eecba27
Merge pull request #730 from MaximMoinat/fix-729
clairblacketer Mar 6, 2025
ab08bea
Merge branch 'main' into patch-1
clairblacketer Mar 6, 2025
863898b
Merge pull request #705 from eroell/patch-1
clairblacketer Mar 6, 2025
9f098ed
fixing incorrect links to cdm531
clairblacketer Mar 6, 2025
225f5e5
Merge branch 'main' of https://github.com/OHDSI/CommonDataModel
clairblacketer Mar 6, 2025
f8c78f8
Merge pull request #469 from OHDSI/v5.4_conversions
clairblacketer Mar 6, 2025
4e14518
Merge branch 'main' into main
clairblacketer Mar 6, 2025
d2dddc5
Merge pull request #699 from wardle/main
clairblacketer Mar 6, 2025
766171a
Update CDM_source documentation
clairblacketer Mar 6, 2025
b4d867c
Merge branch 'main' of https://github.com/OHDSI/CommonDataModel
clairblacketer Mar 6, 2025
8e7f8d4
Fix misspelling ot observation period
clairblacketer Mar 6, 2025
b60f4f4
Fixing v6.0 admitted_from_concept_id and source_value
clairblacketer Mar 6, 2025
ab8a55d
Merge pull request #540 from MaximMoinat/er-diagram
clairblacketer Mar 6, 2025
7921e51
Add relationship table description
clairblacketer Mar 6, 2025
71474f8
adding concept_synonym info
clairblacketer Mar 6, 2025
4a08b62
adds concept_ancestor description
clairblacketer Mar 6, 2025
014b50f
fixes #676
clairblacketer Mar 6, 2025
0ca9910
closes #479
clairblacketer Mar 6, 2025
7cc1ad8
closes #496
clairblacketer Mar 6, 2025
4c707cd
closes #498
clairblacketer Mar 6, 2025
4b96b13
closes #504
clairblacketer Mar 6, 2025
a00afcd
closes #533
clairblacketer Mar 6, 2025
1e03609
fixing missing documentation
clairblacketer Mar 7, 2025
3e2faf2
Add Google Analytics header to site configuration
waydes Nov 3, 2025
142bde8
Add Google Analytics tracking script
waydes Nov 3, 2025
f1500ec
Update _site.yml
clairblacketer Nov 5, 2025
3c43927
Merge pull request #762 from waydes/main
clairblacketer Nov 5, 2025
d83d48c
Adding google tags
clairblacketer Nov 5, 2025
83b01b4
Missing quote for text element containing a quote.
lgautier Feb 2, 2026
11e8248
fix(tests): use correct env var name for PostgreSQL server
haoyu-haoyu Apr 10, 2026
42057f6
migrate to quarto
MaximMoinat Jul 21, 2026
829d649
update sql scripts
MaximMoinat Jul 21, 2026
788973d
refactor docs
MaximMoinat Jul 21, 2026
f9fe82b
cleanup
MaximMoinat Jul 21, 2026
dcfbff9
implements #786 by fixing links in docs
MaximMoinat Jul 21, 2026
d3c33eb
remove calendar
MaximMoinat Jul 21, 2026
69f4840
refactor cdm spec generation
MaximMoinat Jul 21, 2026
8e010da
Merge pull request #766 from lgautier/patch-2
MaximMoinat Jul 21, 2026
571e588
move decision tree pages to seperate folder
MaximMoinat Jul 21, 2026
16a041d
Merge branch 'main' into quarto
MaximMoinat Jul 21, 2026
31fd661
fixes #749
MaximMoinat Jul 21, 2026
93fe498
fixes #752
MaximMoinat Jul 21, 2026
f853f6e
Merge pull request #782 from haoyu-haoyu/fix/test-env-var-mismatch
MaximMoinat Jul 21, 2026
06fd96e
remove oncology extension page
MaximMoinat Jul 22, 2026
805c52b
Merge pull request #796 from MaximMoinat/quarto
clairblacketer Jul 29, 2026
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4 changes: 0 additions & 4 deletions .codespellrc

This file was deleted.

6 changes: 3 additions & 3 deletions CRAN-SUBMISSION
Original file line number Diff line number Diff line change
@@ -1,3 +1,3 @@
Version: 0.2.0
Date: 2024-02-06 20:13:33 UTC
SHA: d152472484fb2bedd2596e2279a24afbd0084f0b
Version: 1.0.1
Date: 2024-10-01 17:22:58 UTC
SHA: 17b2d139c7e982c33cd8abb2ea7db0cd104e756a
1 change: 1 addition & 0 deletions CommonDataModel.Rproj
Original file line number Diff line number Diff line change
@@ -1,4 +1,5 @@
Version: 1.0
ProjectId: e95c10d3-2bfa-4ee9-86e0-8e30b6f55f44

RestoreWorkspace: Default
SaveWorkspace: Default
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7 changes: 5 additions & 2 deletions DESCRIPTION
Original file line number Diff line number Diff line change
@@ -1,8 +1,11 @@
Package: CommonDataModel
Type: Package
Title: OMOP CDM DDL and Documentation Generator
Version: 0.2.0
Author: Clair Blacketer [aut, cre]
Version: 1.0.1
Authors@R: person(given = "Clair",
family = "Blacketer",
role = c("aut", "cre"),
email = "mblacke@its.jnj.com")
Maintainer: Clair Blacketer <mblacke@its.jnj.com>
Description: Generates the scripts required to create an Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM) database and associated documentation for supported database platforms. Leverages the 'SqlRender' package to convert the Data Definition Language (DDL) script written in parameterized Structured Query Language (SQL) to the other supported dialects.
License: Apache License 2.0
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10 changes: 10 additions & 0 deletions NEWS.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,10 @@
CommonDataModel v5.4.2
======================

Bigfixes:

1. Removed package test that was causing issues with downstream dependencies (test-BuildRelease.R)

Documentation:

1. Updated documentation for the OMOP Common Data Model based on the April Olympians 2024 initiative.
13 changes: 6 additions & 7 deletions cran-comments.md
Original file line number Diff line number Diff line change
@@ -1,13 +1,12 @@
## R CMD check results
One test was removed due to its restricting of downstream dependencies.

* This is a new release
## R CMD check results

# Update based on reviewer feedback
- turned off tests when environment variables are not set
- removed vignetteBuilder field from DESCRIPTION
- added return values in function documentation
- updated buildRelease.R default output folder to tempdir()
There were no ERRORs or WARNINGs.

0 errors | 0 warnings | 0 notes

## Comments from reviewer

Edited the author field in the DESCRIPTION file.

158 changes: 0 additions & 158 deletions ddl/5.3/bigquery/OMOPCDM_bigquery_5.3_constraints.sql

This file was deleted.

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