Support PEtab SciML problems and enable linting - #482

Merged

BSnelling merged 38 commits into

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Jun 26, 2026

Commits on Jun 26, 2026

update data types

m-philipps
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add checks for mapping table

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Use SBML in test

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rollback

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move from sciml pr

dilpath
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aliased model logic
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keep FIXME comment
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add hybridization class

m-philipps
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add sciml problem config

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create Problem for sciml extension

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Assign SciML-specific lint checks

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Proble.add_hybridization method

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add hybridization df property, setter

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fix

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add a basic test for sciml

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methods for adding nn, array data to problem

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Non-local petab_sciml import

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add dependency

m-philipps
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Update petab_sciml dependency to use Git URL

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neural_nets to neural_networks
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add required params check to sciml validations
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ruff format
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implement feedback from code review
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move sciml code to separate files and resolve circular imports
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fixup ruff
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fix docs build issue
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Update petab/v2/core.py

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add to docstrings
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Revert "move sciml code to separate files and resolve circular imports"
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use problem.extensions.sciml for separation
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revert mapping table fixes that should be implemented in the other pr

dilpath
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fix aliased model logic - again
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move sciml validation to own file
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use pypi petab_sciml
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feedback from second round review
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refactor sciml specifics into more helpers
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fixup from rebase
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sciml caveat in parameters validation
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