Example notebook for DANDI:001550#136
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@weiglszonja is this PR ready for review? |
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Bring the two Pagan Lab notebooks up to the current Colab/CI requirements: - Prepend the four bootstrap cells (Colab badge, install intro, collapsed `#@title display-mode: form` install cell, restart admonition). - Pin a full transitive lock via `uv pip compile`, constrained to Colab's preinstalled versions (numpy 2.0.2, matplotlib 3.10.0, networkx 3.6.1, pandas 2.2.2, h5py 3.16.0). dandi resolves to 0.76.4 (the DANDI server now rejects <0.74.0); the click constraint is relaxed to allow it. - Pin the git-sourced ndx-structured-behavior to commit b3169248 (was @main) in both the install cell and environment.yml, for reproducibility. - Strip pre-existing invalid `jetTransient` output keys so the notebooks validate against nbformat. Both notebooks verified end-to-end with the CI harness (ok: true). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
"FOF" (Frontal Orienting Field) and "inactivate" (transiently silencing a brain region) are correct neuroscience terms that codespell flags as "FOR"/"deactivate". Add them to the ignore list. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
# Conflicts: # .codespellrc
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Brought this PR up to the current Colab/CI requirements and resolved the conflict with What changed:
No headless gotchas: all plotting is matplotlib ( |
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