DeepOmics Lab

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1. SpecHLA SpecHLA Public

   SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read…

   C++ 62 17

2. SpecImmune SpecImmune Public

   Accurate Typing of Diverse Immune-Related Gene Families from Long-Read Sequencing Data. It can handle HLA, KIR, IG, TCR, CYP gene families. It supports both WGS and amplicon data. It supports PacBi…

   F* 60 3

3. GCNFrame GCNFrame Public

   This is a python package for genomics study with a GCN framework.

   Python 44 8

4. PALACE PALACE Public

   A tool to assemble high-quality phages from metagenomes.

   C++ 27 5

5. DeepHost DeepHost Public

   This is the repository for DeepHost, a phage host prediction tool.

   Python 23

6. LocalHGT LocalHGT Public

   Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.

   Python 18 1