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Install pathogen-embed and evofr together - #296

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joverlee521 merged 1 commit into
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fix-pathogen-embed-2
Aug 14, 2026
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Install pathogen-embed and evofr together#296
joverlee521 merged 1 commit into
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fix-pathogen-embed-2

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@joverlee521

@joverlee521 joverlee521 commented Aug 13, 2026

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Description of proposed changes

Resolves #294
Alternative of #295

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joverlee521 merged commit 3f2b274 into master Aug 14, 2026
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joverlee521 deleted the fix-pathogen-embed-2 branch August 14, 2026 00:00
@huddlej

huddlej commented Aug 14, 2026

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I'm sorry about the mess that is pathogen-embed's dependencies! I just released version 4.0.0 of pathogen-embed which removes hardcoded dependencies and makes the internals compatible with latest versions of numpy, scikit-learn, etc.

I'll update the Bioconda recipe later to reflect this change in dependencies, too.

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pathogen-embed and numpy version incompatibility

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