Search results

Automated Reporting for Systems Biology Modeling Workflows

Difficulty: Medium

GitHub

HTML

Python

SBML

SED-ML

Size: 175h

Status: Open.

#281 In nrnb/GoogleSummerOfCode;

· matthiaskoenig opened on Jan 28, 2026

Provide established Metabolic Systems Biology tooling for Reconstruction and Analysis with LLMs

Difficulty: Medium

Docker

JSON

Python

Size: 175h

Status: Open.

#280 In nrnb/GoogleSummerOfCode;

· Schmoho opened on Jan 27, 2026

Advancing Web-Based SBGN Editing and Visualization

Cytoscape.js

Difficulty: Medium

JavaScript

Size: 175h

Status: Open.

#278 In nrnb/GoogleSummerOfCode;

· cannin opened on Jan 14, 2026

Improve the Validation of SBGN Diagrams

Difficulty: Medium

JavaScript

Python

SBGN

Size: 175h

XML

Status: Open.

#277 In nrnb/GoogleSummerOfCode;

· cannin opened on Jan 9, 2026

Curation Support Tools for the Creation of a Lung Cancer Disease Map

Difficulty: Medium

LLM

Python

Size: 175h

Status: Open.

#262 In nrnb/GoogleSummerOfCode;

· cannin opened on Feb 28, 2025

COBRAxy: constraint-based metabolic modeling in Galaxy

Difficulty: Medium

Galaxy

Python

Size: 175h

Status: Open.

#248 In nrnb/GoogleSummerOfCode;

· kiaradamiani opened on Jan 22, 2025

Improving Cytoscape.js layout utilities

Cytoscape.js

Difficulty: Hard

JavaScript

Size: 175h

Status: Open.

#247 In nrnb/GoogleSummerOfCode;

· ugurdogrusoz opened on Jan 22, 2025

Assisting the creation of SBGN diagrams using large language models (LLMs)

CSS

Difficulty: Medium

HTML

JavaScript

LLM

SBGN

Size: 175h

Status: Open.

#245 In nrnb/GoogleSummerOfCode;

· hasanbalci opened on Jan 10, 2025

Getting the complexity score from SBOL files to streamline DNA synthesis using standards

Difficulty: Medium

Python

SBOL

Size: 175h

Status: Open.

#241 In nrnb/GoogleSummerOfCode;

· Gonza10V opened on Mar 25, 2024

Cytoscape Automated Testing Suite for Biomedical Visualization

Cytoscape

Difficulty: Medium

JavaScript

Python

REST

Size: 175h

Status: Open.

#233 In nrnb/GoogleSummerOfCode;

· jingjingbic opened on Jan 14, 2024

Large Network Renderer

Cytoscape

Difficulty: Medium

Hierarchical network

HiView

JavaScript

JSON

NDEx

OpenGL

Size: 175h

Status: Open.

#229 In nrnb/GoogleSummerOfCode;

· jingjingbic opened on Jan 12, 2024

Prototype COSE Network Layout Algorithm to Support Biological Context for Layouts More Intuitive to Humans

Cytoscape.js

Difficulty: Medium

JavaScript

JSON

Size: 175h

Status: Open.

#219 In nrnb/GoogleSummerOfCode;

· cannin opened on Jan 20, 2023