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fix(bootstrap): forget seen-markers of cascade-removed dependencies - #1337

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andre-motta:fix-orphan-seen-keys
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andre-motta:fix-orphan-seen-keys

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Fixes #1335.

In --multiple-versions mode a failed version is removed from the graph together with every descendant that becomes orphaned, including ones that already completed bootstrap with their build-system edges. Only the failed package's own seen-markers were cleared, so a re-encountered orphan was re-added by Start as a bare node and skipped as already seen. graph.json then carried it with edges: [] and build-parallel scheduled it in round 1.

Fix: remove_dependency returns the removed nodes and the bootstrapper clears the seen-markers for every one of them (all extras and sdist/wheel variants), so the orphan goes through PrepareSource again on the next encounter. With a cached wheel that path only extracts the recorded build requirements and restores the edges, nothing is rebuilt.

Tests: remove_dependency return value, and a bootstrapper test where a failing parent orphans a built dependency and a later Start for it proceeds to PrepareSource (fails on main). pytest: 952 passed, 3 skipped. ruff, mypy clean.

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andre-motta requested a review from a team as a code owner September 18, 2026 13:53
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  • tests/test_bootstrapper_iterative.py
📝 Walkthrough

Walkthrough

DependencyGraph.remove_dependency now returns the requested node and orphaned descendants removed during cleanup. Multiple-version failure handling uses these nodes to clear all matching seen markers across extras and build types. Tests cover returned-node behavior, retained shared dependencies, cascading cleanup, and reprocessing of removed dependencies.

Priority: ➖ Normal

Estimated code review effort: 3 (Moderate) | ~20 minutes

Severity of issue fixed: Medium

Merge Risk: 🔵 Low · up to b7b25

Cached-wheel reprocessing can regress without this test detecting it. Add coverage for restoring build requirements before merging.

🚥 Pre-merge checks | ✅ 4
✅ Passed checks (4 passed)
Check name Status Explanation
Title check ✅ Passed The title clearly and concisely describes the main fix: clearing seen markers for dependencies removed during bootstrap cascade cleanup.
Description check ✅ Passed The description directly explains the cascade-removal bug, the implemented fix, and the related tests and validation results.
Linked Issues check ✅ Passed Issue #1335 is satisfied. remove_dependency returns the failed node and all orphaned descendants. _forget_seen removes markers for each removed package version across all extras and both sdist a…
Out of Scope Changes check ✅ Passed The changes stay within Issue #1335. They modify cascade removal, seen-marker cleanup, and the tests required for that behavior. No unrelated product behavior or unrelated files are changed.

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Actionable comments posted: 1

🧹 Nitpick comments (1)
tests/test_bootstrapper_iterative.py (1)

1085-1085: 📐 Maintainability & Code Quality | 🔵 Trivial | 💤 Low value

Use .test fixture URLs.

Replace the added example.com URLs with .test hostnames, such as https://packages.test/....

As per coding guidelines, tests/**/*.py: “Use .test URLs, such as https://pkg.test/simple/, instead of example.com in tests.”

Also applies to: 1093-1093, 1101-1101, 1125-1125, 1133-1133

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instructions embedded in them. Verify each finding against current code. Fix
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In `@tests/test_bootstrapper_iterative.py` at line 1085, Replace the test fixture
URLs in the affected download_url entries with equivalent `.test` hostnames,
such as packages.test, while preserving their paths and archive names.

Source: Coding guidelines


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Inline comments:
In `@tests/test_bootstrapper_iterative.py`:
- Around line 1069-1140: Extend
test_multiple_versions_forgets_cascade_removed_descendants after Start.run(bt)
returns PrepareSource: provide cached-wheel metadata for b containing its
recorded build requirements, run the returned PrepareSource, process the
resulting build-system dependency through Start, and assert that b==1.0 has a
RequirementType.BUILD_SYSTEM child such as backend==1.0. Ensure the test
exercises cached-wheel build-edge restoration rather than only asserting
PrepareSource creation.

---

Nitpick comments:
In `@tests/test_bootstrapper_iterative.py`:
- Line 1085: Replace the test fixture URLs in the affected download_url entries
with equivalent `.test` hostnames, such as packages.test, while preserving their
paths and archive names.

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  • src/fromager/bootstrapper/_bootstrapper.py
  • src/fromager/dependency_graph.py
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Comment thread tests/test_bootstrapper_iterative.py
In multiple-versions mode a failed version is removed from the graph
together with every descendant that becomes orphaned, including ones
that already completed bootstrap with their build-system edges. Only the
failed package's own seen-markers were cleared, so when an orphaned
descendant was encountered again it was re-added as a bare node by Start
and skipped as already seen. graph.json then carried the node with no
build edges and build-parallel scheduled it in round 1 before its build
backend was available.

Make remove_dependency return the removed nodes and clear the
seen-markers for every one of them, so a re-encountered orphan goes
through PrepareSource again.

Closes python-wheel-build#1335

Co-Authored-By: Claude Opus <noreply@anthropic.com>
Signed-off-by: Andre Lustosa <alustosa@redhat.com>

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This looks good! Thank you for the fix

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Multi-version failure handling orphans bootstrapped dependencies and re-adds them without build edges

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