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Pull requests: scverse/spatialdata

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Pull requests list

fix: write OME channel labels as strings
#1168 opened Jul 25, 2026 by stanbot8 Loading…
1
1
fix: support raster labels above uint16
#1167 opened Jul 24, 2026 by stanbot8 Loading…
1
1
feat: add opt-in rasterization tiles
#1166 opened Jul 24, 2026 by stanbot8 Loading…
1
1
fix: point table validation to public sanitizer
#1165 opened Jul 24, 2026 by stanbot8 Loading…
1
1
Transformation manager foundation
#1164 opened Jul 14, 2026 by ajkswamy Collaborator Loading…
9 tasks done
@ajkswamy
70
[pre-commit.ci] pre-commit autoupdate
#1163 opened Jul 13, 2026 by pre-commit-ci Bot Loading…
1
feat(centroids): add return_area + SpatialData persist to get_centroids
#1150 opened Jun 19, 2026 by timtreis Member Loading…
21
Add downloadable cells dataset via scverse-misc
#1149 opened Jun 19, 2026 by timtreis Member Loading…
3
Accept zipped zarr stores as an input for spatialdata.read_zarr(). Must also have ome-zarr-py ZarrLocation changes.
#1141 opened Jun 3, 2026 by pennycuda Loading…
3
Split SpatialData objects via deconcatenate()
#1124 opened May 11, 2026 by LucaMarconato Member Loading…
3
feat: generalize Zarr I/O in spatialdata to local and add remote (fsspec / UPath) backends remote ☁️
#1107 opened Apr 17, 2026 by selmanozleyen Member Loading…
4 tasks
18
Support sharding through config and raster_write_kwargs
#1106 opened Apr 14, 2026 by melonora Collaborator Loading…
93
feat: Add lazy table loading via anndata.experimental.read_lazy
#1055 opened Jan 27, 2026 by Tomatokeftes Loading…
6 tasks done
1
Local cloud remote ☁️
#999 opened Oct 22, 2025 by sophiamaedler Loading…
3
add remote support remote ☁️
#971 opened Aug 20, 2025 by melonora Collaborator • Draft
3
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