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Add nucleoatac run module - #12915

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PFRoux:add-nucleoatac-run
Open

Add nucleoatac run module#12915
PFRoux wants to merge 2 commits into
nf-core:masterfrom
PFRoux:add-nucleoatac-run

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@PFRoux

@PFRoux PFRoux commented Sep 10, 2026

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PR checklist

Closes issue number #12914

This PR adds a new nucleoatac/run module.

NucleoATAC calls nucleosome positions, nucleosome-free regions and occupancy tracks from paired-end ATAC-seq data.

Local checks:

  • nf-core modules lint nucleoatac/run --plain-text
  • nf-test test --tag nucleoatac/run --profile docker --update-snapshot

Lint result:

  • 52 tests passed
  • 0 warnings
  • 0 failures

Notes:

  • Uses bioconda::nucleoatac=1.0.0
  • Uses quay.io/biocontainers/nucleoatac:1.0.0--py310h3479294_0

@PFRoux

PFRoux commented Sep 10, 2026

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Hi nf-core/modules team,

The nucleoatac/run module is ready for review. Local linting passed with:

  • nf-core modules lint nucleoatac/run --plain-text
  • 52 tests passed, 0 warnings, 0 failures

The Docker stub test also passed locally with nf-test 0.9.5.

Could someone please approve the GitHub Actions workflows when convenient?

Thanks!

@PFRoux
PFRoux enabled auto-merge September 11, 2026 15:38
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2 participants