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Pull requests: nf-core/modules

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Pull requests list

New module: motifmatchr/matchmotifs
#12927 opened Sep 10, 2026 by PFRoux Loading…
1
New module: tobias/bindetect
#12925 opened Sep 10, 2026 by PFRoux Loading…
1
New module: tobias/scorebigwig
#12923 opened Sep 10, 2026 by PFRoux Loading…
1
New module: tobias/atacorrect
#12921 opened Sep 10, 2026 by PFRoux Loading…
1
New module: mgatk/call
#12919 opened Sep 10, 2026 by PFRoux Loading…
1
Add telomerehunter2 module
#12917 opened Sep 10, 2026 by PFRoux Loading…
Add nucleoatac run module
#12915 opened Sep 10, 2026 by PFRoux Loading…
2 tasks done
1
fix(krakenuniq/preloadedkrakenuniq): fix --preload-size handling, report optionality, and simplify stub
#12912 opened Sep 10, 2026 by mahesh-panchal Member • Draft
3 of 5 tasks
Add sativaepang/* modules: reference, lootasks, looplace, looscore
#12910 opened Sep 9, 2026 by erikrikarddaniel Member Loading…
13 of 14 tasks
9
CI: test composite change detection action
#12898 opened Sep 7, 2026 by adamrtalbot Contributor • Draft
3 of 7 tasks
fix(clustalo/align): wait for compression and propagate pigz failures
#12894 opened Sep 6, 2026 by dnncha Loading…
6
Update fastaguard to 1.0.0
#12892 opened Sep 5, 2026 by ehsanestaji Contributor • Draft
6 of 7 tasks
fix: deduplicate bclconvert FASTQ outputs
#12883 opened Sep 3, 2026 by atrigila Contributor • Draft
Fix miniconda version
#12879 opened Sep 3, 2026 by LouisLeNezet Contributor Loading…
17 tasks
3
New module: xengsort/classify Ready for Review
#12864 opened Sep 1, 2026 by LeonHornich Contributor Loading…
12 of 14 tasks
1
Update pre-commit hooks size/xs
#12860 opened Sep 1, 2026 by renovate Bot Loading…
2 tasks
Add STAR Suite alignment and genome generation modules
#12826 opened Aug 27, 2026 by lhhunghimself Loading…
11 of 12 tasks
1
Add parabricks/deepsomatic size/m
#12797 opened Aug 26, 2026 by SPPearce Contributor • Draft
3
Migrate starfusion/build to topics size/l
#12748 opened Aug 18, 2026 by mribeirodantas Member Loading…
17 tasks
1
@mribeirodantas
16
Remove fixed UMI-tools seeds Do not merge yet
#12662 opened Aug 12, 2026 by pinin4fjords Member Loading…
5
Add STRAGLR module
#12644 opened Aug 10, 2026 by lukejroche Loading…
2 tasks
1
2
Update to topic qualimap
#12625 opened Aug 7, 2026 by LouisLeNezet Contributor Loading…
17 tasks
1
@LouisLeNezet
7
Provide .fna support for pbmm2/align
#12602 opened Aug 6, 2026 by stvdsomp Loading…
6 tasks done
4
Update to topic phyloflash Do not merge yet
#12577 opened Aug 4, 2026 by LouisLeNezet Contributor Loading…
17 tasks
1
@LouisLeNezet
5
Add subworkflow for gridss somatic structural variant calling
#12574 opened Aug 4, 2026 by imsarath Contributor Loading…
14 of 17 tasks
1
@imsarath
12
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