New module: motifmatchr/matchmotifs - #12927
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September 11, 2026 15:51
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PR checklist
Closes #12926
Summary
Adds motifmatchr/matchmotifs for matching a JASPAR-format motif collection to BED regions using a reference FASTA.
The module emits:
This deliberately keeps motif scanning separate from chromVAR deviation analysis, making the result reusable and avoiding a combined container with unrelated dependencies.
Software requirements
Validation
Note: the Galaxy Singularity mirror for this exact newly published Biocontainers tag currently returns 404. The Docker/OCI image is public and was used for the test.