Skip to content
Open
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion src/spatialdata/_core/validation.py
Original file line number Diff line number Diff line change
Expand Up @@ -388,7 +388,7 @@ def __exit__(
# Exceptions were collected that we want to raise as a combined validation error.
if self._collector.errors:
raise ValidationError(
title=self._message + "\nTo fix, run `spatialdata.utils.sanitize_table(adata)`.",
title=self._message + "\nTo fix, run `spatialdata.sanitize_table(adata)`.",
errors=self._collector.errors,
)
return True
13 changes: 13 additions & 0 deletions tests/models/test_models.py
Original file line number Diff line number Diff line change
Expand Up @@ -26,6 +26,7 @@
from spatial_image import to_spatial_image
from xarray import DataArray, DataTree

import spatialdata
from spatialdata._core.spatialdata import SpatialData
from spatialdata._core.validation import ValidationError
from spatialdata._types import ArrayLike
Expand Down Expand Up @@ -624,6 +625,18 @@ def test_table_model_invalid_names(self, key: str, attr: str, parse: bool):
else:
TableModel.validate(adata)

def test_table_model_invalid_name_suggests_public_sanitizer(self):
adata = AnnData(np.array([[0]]), uns={"invalid name": {}})

with pytest.raises(
ValidationError,
match=r"`spatialdata\.sanitize_table\(adata\)`",
):
TableModel.validate(adata)

spatialdata.sanitize_table(adata)
TableModel.validate(adata)

@pytest.mark.parametrize(
"keys",
[
Expand Down